2012
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Needs
- Provide integrated analysis environment for Metabolomics
- Emerging field
Bioinformatics platform
- Skills and experiences (e.g. NGS)
Which tools /software?
- Build data analysis workflow
- Traceability
- High Performance Computing resources
- Data and pipeline sharing
- Galaxy - perfect tool? Internship : 1 month – june 2012
V1
- Proof of Concept: XCMS package integration in a few weeks!
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2013
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Funding
- Brittany : 2 Y (Workflow4Metabo)
- ABiMS
- Pierre Péricard & Gildas Le Corguillé
- Auvergne : 2 Y. (FLAME)
- PFEM
- Franck Giacomoni & JF Martin
V2
- Correlation analysis & Statistical : Hierarchical Clustering, ANOVA, PCA
- New components : Quality control, Normalization, Annotation
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2014
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Institut Français de Bio-informatique / MetaboHUB
- Change of scale: partners number, regional/national, etc.
- Greater synergy
- Sharing : internal training & transfer of skills and knowledge
- Complementarity of skills : Metabolomics / Bioinformatics
V3
- Virtual Research Infrastructure
- Several and new tools!
- Quality control
- Normalization
- Statistical Analysis
- Annotation
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2015
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New collaboration with CNRS IRISA and LINA labs
- Creation of GC-MS modules
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